Epigenome Atlas

Paired ATAC-seq and WGBS data from nine Acer palmatum leaf samples: three biological replicates each in spring, summer and autumn.

1
Species: Acer palmatum
3
Seasons (Spring · Summer · Autumn)
9
ATAC-seq Samples (3 replicates/season)
9
WGBS Samples (3 replicates/season)
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Total ATAC Peaks (avg across samples)
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Mean CpG Methylation (%)

ATAC-seq: Chromatin Accessibility

Open Chromatin
Peak Count per Sample
Number of accessible chromatin peaks called per sample (MACS3)
Seasonal Average Peak Count
Mean peaks across 3 biological replicates per season
Sample Details
Sample IDSeasonReplicatePeak CountTotal Peak bpAvg Peak WidthDownloadView
Method: ATAC-seq libraries prepared from Acer palmatum leaf nuclei. The displayed peak counts and seasonal means are descriptive summaries of three biological replicates per season.

WGBS: DNA Methylation

CpG Methylation
CpG Methylation per Sample (%)
Read-weighted CpG methylation (%)
Seasonal Mean CpG Methylation (%)
Mean of 3 biological replicates per season
Sample Details
Run AccessionOriginal SampleSeasonReplicateCpG methylation (%)DownloadView
Method: Read-weighted CpG methylation is 100 × the total methylated-read count divided by the total methylated plus unmethylated read count across Bismark CpG coverage records (depth ≥1; overlapping mates counted once). Seasonal values are arithmetic means of three biological replicates. Download sample summaries (TSV) · PRJNA1163018 · Processing details.

Explore in Genome Browser

View ATAC-seq and WGBS coverage tracks alongside gene annotations for Acer palmatum in the interactive JBrowse genome browser.

WGBS BigWig tracks show RPKM-normalized read coverage in 10-bp bins.

Open in JBrowse 27 epigenome tracks available