RNA-seq, Ribo-seq and proteome records for Acer truncatum seeds at 85 DAF (CK) and 115 DAF (T), with three biological replicates per stage.
Cross-layer expression PPI Network →
Data source: Ma et al. (2023) BMC Biol. 21, 68 — RNA-seq & Ribo-seq: NCBI PRJNA877423 · Proteome: iProX IPX0005014000
| Gene ID | Symbol | Layer | CK mean | T mean | log₂FC | FDR |
|---|
Each point is one gene (n = …) passing the expression floor in both layers. x: transcriptome log₂FC, y: translatome log₂FC (T vs CK). Classes by |log₂FC| ≥ 1: forwarded (concordant), intensified (concordant, |ΔTE| ≥ 1), exclusive (translatome only), buffered (transcriptome only or discordant). Click a point to open the gene. Reanalysis after Ma et al. (2023).
| Gene ID | Symbol | Class | log₂TE CK | log₂TE T | ΔTE | RNA FC | Ribo FC | uORF |
|---|
| ORF ID | Type | Host gene | Peptide (aa) | CK FPKM | T FPKM | log₂FC | FDR |
|---|
log₂TE distribution of genes with vs without an annotated uORF (boxes: 25–75%, line: median, whiskers: 5–95%).